Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results

• Niina Haiminen ,

  * E-mail: nhaimin@us.ibm.com (NH); isidore.rigoutsos@jefferson.edu (IR)

  Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

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• David N. Kuhn,

  Affiliation Subtropical Horticulture Research Station, Agricultural Research Service (ARS), United States Department of Agriculture (USDA), Miami, Florida, United Sates of America

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• Laxmi Parida,

  Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

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• Isidore Rigoutsos

  * E-mail: nhaimin@us.ibm.com (NH); isidore.rigoutsos@jefferson.edu (IR)

  Current address: Computational Medicine Center, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  Affiliation Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York, United States of America

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