Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

Open Access

Peer-reviewed

Research Article

Jenna L. Morgan,

Affiliations Department of Medical Microbiology and Immunology, University of California Davis, Davis, California, United States of America, Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America, United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America
⨯
Aaron E. Darling,

Affiliations Department of Medical Microbiology and Immunology, University of California Davis, Davis, California, United States of America, Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America
⨯
Jonathan A. Eisen

* E-mail: jaeisen@ucdavis.edu

Affiliations Department of Medical Microbiology and Immunology, University of California Davis, Davis, California, United States of America, Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America, United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America
⨯

Reader Comments

phylogenetic tree
http://plosone.org/article/info:doi/10.1371/journal.pone.0010209#pone-0010209-g001

We inadvertently did not explain how this tree was made in the paper. It was made using the iTOL software http://itol.embl.de/. See the paper behind iTOL (Letunic I, Bork P. 2007. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 1;23(1):127-8. ) here: http://www.ncbi.nlm.nih.gov/pubmed/17050570

Competing interests declared: I am the senior author of this paper.

Metagenomics
Is the Subject Area "Metagenomics" applicable to this article?

Thanks for your feedback.
DNA extraction
Is the Subject Area "DNA extraction" applicable to this article?

Thanks for your feedback.
Genomics
Is the Subject Area "Genomics" applicable to this article?

Thanks for your feedback.
DNA sequencing
Is the Subject Area "DNA sequencing" applicable to this article?

Thanks for your feedback.
DNA isolation
Is the Subject Area "DNA isolation" applicable to this article?

Thanks for your feedback.
Biochemical simulations
Is the Subject Area "Biochemical simulations" applicable to this article?

Thanks for your feedback.
Glycerol
Is the Subject Area "Glycerol" applicable to this article?

Thanks for your feedback.
DNA libraries
Is the Subject Area "DNA libraries" applicable to this article?

Thanks for your feedback.